The goal of micro4all is to unify all functions used in our laboratory to get a complete analysis of amplicon data for microbial community studies. It includes several useful tools, as an automatized detection of MOCK community and calculation of community cut-off as well as loops for statistical analysis.
You can install micro4all directly from GitHub with:
devtools::install_github("nuriamw/micro4all")Along with this package, a full and detailed workflow has been created. There, you can find our usual pipeline for data analysis and examples of micro4all functions. Check the tutorial here